-- AlbertoGasconBravo - 2014-12-03

Job submitting to BIRD:

First, login into NAF:

* ssh -X -l gascon naf-atlas.desy.de

My NFS directory is under /nfs/dust/atlas/user/gascon. A sample job Macro is in /nfs/dust/atlas/user/gascon/job_macro.sh. It loads the shell, the environment variables, and sets a python version recent enough.

To send jobs one has to run

qsub -v QUEUE ="long.q" -l h_rt=80:00:00 -l h_vmem=20G -M alberto.gascon.bravo@desyNOSPAMPLEASE.de -m bea job_macro.sh

  • -v QUEUE lets you choose to which queue send the job
  • -l h_rt sets a maximum execution time. If the job reaches this time and hasn't finished, it will be receive a KILL signal. Each queue has a defult maximum time that can be overriden this way
  • -M sets a mail address to send job notifications
  • -m sets whether the mail should be sent after the end(s), begin(b), abort(a) or suspend(s) of the batch jobs
Edit | Attach | Watch | Print version | History: r2 < r1 | Backlinks | Raw View | WYSIWYG | More topic actions
Topic revision: r2 - 2014-12-03 - unknown
 
    • Cern Search Icon Cern Search
    • TWiki Search Icon TWiki Search
    • Google Search Icon Google Search

    Sandbox All webs login

This site is powered by the TWiki collaboration platform Powered by PerlCopyright & 2008-2020 by the contributing authors. All material on this collaboration platform is the property of the contributing authors.
or Ideas, requests, problems regarding TWiki? use Discourse or Send feedback