Using Athena at BNL

You will need a computing account at BNL and you will have to create a register a public key. Then you can login to BNL:

>> ssh -X
You will be prompted for password for your security key. Once inside the gateway, do:
>> rterm -i
You will be prompted for you BNL account password.

Following the advice of the USATLAS TWiki, my cmthome/requirements file at BNL is

macro PROJ_RELEASE   "latest" \
         12.0.6         "12.0.6" \
         13.0.30        "13.0.30" \
         13.0.40        "13.0.40" \
         13.1.0         "13.1.0" \
         13.2.0         "13.2.0"

macro PROJ_BASE_RELEASE   "$(PROJ_RELEASE)" \      "13.0.25"

         bugfix      "bugfix/$(PROJ_BASE_RELEASE)" \
         dev         "dev/$(PROJ_BASE_RELEASE)"

set SITEROOT /opt/usatlas/kit_rel/${PROJ_SUBDIR}
#macro ATLAS_GROUP_AREA "/afs/"
apply_tag oneTest
apply_tag setupCMT
apply_tag setup
apply_tag noCVSROOT
apply_tag 32
use AtlasLogin AtlasLogin-* $(ATLAS_DIST_AREA)
macro setup_slc3compat "" \
      gcc323  "/opt/usatlas/kit_rel/SLC3/setup_slc3compat"
setup_script $(setup_slc3compat)
I have added the ATLAS_GROUP_AREA line in order to use EventView in release 13.0.30, but for release 13.0.40, the Group Area is not needed and I have commented it out. You should also set the CVSROOT in your .bashrc file so that you can check out packages.
export CVSROOT=/afs/
echo "CVSROOT set for BNL to " $CVSROOT

I find it convenient when setting up athena and running jobs, to define the following functions in my .bashrc file:

function setup {
    source ${HOME}/cmthome/ -tag=$*
function makeit {
    cmt config
    source ./
function run {
    nohup $* &> $1.log &
    tail -f $1.log
Using the above to set up athena, all I have to do is run setup follow by the comma separated tags, e.g.
>> setup 13.0.30,groupArea
>> setup 13.0.40

The makeit function, explained in my notes on Checking Out a Package, is used to compile a package.

And to run an athena job, all I do is

>> run
This creates a log file of the athena ouput, and prints it to the screen real time using tail -f.

In general, refer to the Computing Workbook for learning how to setup and run athena.

Back to top

-- RyanReece - 11 Jan 2008
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Topic revision: r2 - 2008-01-11 - RyanReece
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